HL_7NHL_046

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

7NHL|1|A|A|1807, 7NHL|1|A|U|1808, 7NHL|1|A|C|1809, 7NHL|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_046 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0987

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

7NHL|1|A|U|1804
7NHL|1|A|U|1805
7NHL|1|A|U|1806
7NHL|1|A|A|1807
7NHL|1|A|U|1808
7NHL|1|A|C|1809
7NHL|1|A|A|1810
7NHL|1|A|A|1811
7NHL|1|A|A|1812
7NHL|1|A|A|1813
7NHL|1|A|A|1814

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2