HL_7NHL_055

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7NHL|1|A|A|2295, 7NHL|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_055 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1109

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7NHL|1|A|C|2291
7NHL|1|A|U|2292
7NHL|1|A|A|2293
7NHL|1|A|A|2294
7NHL|1|A|A|2295
7NHL|1|A|A|2296
7NHL|1|A|G|2297
7NHL|1|A|G|2298
7NHL|1|A|U|2299
7NHL|1|A|A|2300
7NHL|1|A|A|2301
7NHL|1|A|C|2302
7NHL|1|A|G|2303

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27