HL_7NHL_067

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7NHL|1|A|G|2778, 7NHL|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1085

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7NHL|1|A|C|2772
7NHL|1|A|U|2773
7NHL|1|A|G|2774
7NHL|1|A|A|2775
7NHL|1|A|A|2776
7NHL|1|A|A|2777
7NHL|1|A|G|2778
7NHL|1|A|C|2779
7NHL|1|A|A|2780
7NHL|1|A|U|2781
7NHL|1|A|C|2782
7NHL|1|A|U|2783
7NHL|1|A|A|2784
7NHL|1|A|A|2785
7NHL|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6