HL_7NHL_072

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUACG

Length

6 nucleotides

Bulged bases

7NHL|1|B|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_072 not in the Motif Atlas

Geometric match to HL_7RQB_007

Geometric discrepancy: 0.2824

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHL|1|B|C|83
7NHL|1|B|U|84
7NHL|1|B|U|85
7NHL|1|B|A|86
7NHL|1|B|C|87
7NHL|1|B|G|88

Current chains

Chain B

5S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16