HL_7NHL_096

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

7NHL|1|a|G|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_096 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.162

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NHL|1|a|G|973
7NHL|1|a|A|974
7NHL|1|a|A|975
7NHL|1|a|G|976
7NHL|1|a|C|977
7NHL|1|a|A|978
7NHL|1|a|A|979
7NHL|1|a|C|980
7NHL|1|a|G|981
7NHL|1|a|C|982

Current chains

Chain a

16S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10