HL_7NHM_012

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

7NHM|1|A|A|372, 7NHM|1|A|A|373, 7NHM|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1304

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7NHM|1|A|G|370
7NHM|1|A|U|371
7NHM|1|A|A|372
7NHM|1|A|A|373
7NHM|1|A|U|374
7NHM|1|A|A|375
7NHM|1|A|A|376
7NHM|1|A|U|377
7NHM|1|A|C|378

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24