HL_7NHM_021

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

7NHM|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_021 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.1486

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7NHM|1|A|U|686
7NHM|1|A|G|687
7NHM|1|A|A|688
7NHM|1|A|A|689
7NHM|1|A|U|690
7NHM|1|A|A|691
7NHM|1|A|G|692

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L33 2

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15