HL_7NHM_049

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7NHM|1|A|A|1940

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_049 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2378

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NHM|1|A|G|1937
7NHM|1|A|U|1938
7NHM|1|A|A|1939
7NHM|1|A|A|1940
7NHM|1|A|C|1941
7NHM|1|A|U|1942
7NHM|1|A|A|1943
7NHM|1|A|U|1944
7NHM|1|A|A|1945
7NHM|1|A|A|1946
7NHM|1|A|C|1947

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA