HL_7NHN_008

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_008 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.0904

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

7NHN|1|A|C|248
7NHN|1|A|G|249
7NHN|1|A|G|250
7NHN|1|A|C|251
7NHN|1|A|G|252
7NHN|1|A|A|253
7NHN|1|A|G|254

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15