HL_7NHN_019

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAAAAG

Length

9 nucleotides

Bulged bases

7NHN|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_019 not in the Motif Atlas

Geometric match to HL_4V9F_043

Geometric discrepancy: 0.1959

The information below is about HL_4V9F_043

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NHN|1|A|C|654
7NHN|1|A|G|655
7NHN|1|A|G|656
7NHN|1|A|A|657
7NHN|1|A|A|658
7NHN|1|A|A|659
7NHN|1|A|A|660
7NHN|1|A|A|661
7NHN|1|A|G|662

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4