HL_7NHN_032

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_032 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.1055

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

7NHN|1|A|G|1325
7NHN|1|A|U|1326
7NHN|1|A|G|1327
7NHN|1|A|A|1328
7NHN|1|A|G|1329
7NHN|1|A|A|1330
7NHN|1|A|A|1331
7NHN|1|A|U|1332
7NHN|1|A|C|1333

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22