HL_7NHN_044

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAGCAAAAA

Length

11 nucleotides

Bulged bases

7NHN|1|A|A|1813, 7NHN|1|A|G|1814, 7NHN|1|A|C|1815, 7NHN|1|A|A|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_044 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0878

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

7NHN|1|A|U|1810
7NHN|1|A|U|1811
7NHN|1|A|U|1812
7NHN|1|A|A|1813
7NHN|1|A|G|1814
7NHN|1|A|C|1815
7NHN|1|A|A|1816
7NHN|1|A|A|1817
7NHN|1|A|A|1818
7NHN|1|A|A|1819
7NHN|1|A|A|1820

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2