HL_7NHN_051

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGCG

Length

7 nucleotides

Bulged bases

7NHN|1|A|U|2244, 7NHN|1|A|G|2246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_051 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1948

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7NHN|1|A|C|2242
7NHN|1|A|U|2243
7NHN|1|A|U|2244
7NHN|1|A|A|2245
7NHN|1|A|G|2246
7NHN|1|A|C|2247
7NHN|1|A|G|2248

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain G

50S ribosomal protein L2