HL_7NHN_053

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7NHN|1|A|A|2301, 7NHN|1|A|C|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0945

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7NHN|1|A|C|2297
7NHN|1|A|U|2298
7NHN|1|A|A|2299
7NHN|1|A|A|2300
7NHN|1|A|A|2301
7NHN|1|A|G|2302
7NHN|1|A|A|2303
7NHN|1|A|G|2304
7NHN|1|A|U|2305
7NHN|1|A|A|2306
7NHN|1|A|A|2307
7NHN|1|A|C|2308
7NHN|1|A|G|2309

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27