HL_7NHN_058

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7NHN|1|A|C|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1125

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHN|1|A|C|2437
7NHN|1|A|G|2438
7NHN|1|A|C|2439
7NHN|1|A|A|2440
7NHN|1|A|U|2441
7NHN|1|A|G|2442
7NHN|1|A|G|2443
7NHN|1|A|A|2444
7NHN|1|A|A|2445
7NHN|1|A|G|2446

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15