HL_7NHN_097

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7NHN|1|a|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_097 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1265

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7NHN|1|a|G|1100
7NHN|1|a|U|1101
7NHN|1|a|U|1102
7NHN|1|a|A|1103
7NHN|1|a|A|1104
7NHN|1|a|G|1105
7NHN|1|a|U|1106
7NHN|1|a|C|1107

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2