HL_7NHN_104

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGGAAAU

Length

9 nucleotides

Bulged bases

7NHN|1|A|A|2338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_104 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.3172

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHN|1|A|G|2337
7NHN|1|A|A|2338
7NHN|1|A|U|2339
7NHN|1|A|G|2340
7NHN|1|A|G|2341
7NHN|1|A|A|2342
7NHN|1|A|A|2343
7NHN|1|A|A|2344
7NHN|1|A|U|2345

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L5