HL_7NQH_017

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAGCACA

Length

7 nucleotides

Bulged bases

7NQH|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQH_017 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.1779

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NQH|1|AA|U|664
7NQH|1|AA|A|665
7NQH|1|AA|G|666
7NQH|1|AA|C|667
7NQH|1|AA|A|668
7NQH|1|AA|C|669
7NQH|1|AA|A|670

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AG

28S ribosomal protein S7, mitochondrial

Chain AI

uS9m

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14