HL_7NQH_019

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

7NQH|1|AA|C|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQH_019 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.1775

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7NQH|1|AA|A|760
7NQH|1|AA|U|761
7NQH|1|AA|G|762
7NQH|1|AA|A|763
7NQH|1|AA|A|764
7NQH|1|AA|A|765
7NQH|1|AA|C|766
7NQH|1|AA|U|767

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33