HL_7NQL_008

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQL_008 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.2802

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7NQL|1|AA|C|248
7NQL|1|AA|C|249
7NQL|1|AA|A|250
7NQL|1|AA|C|251
7NQL|1|AA|C|252
7NQL|1|AA|G|253

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain Ap

28S ribosomal protein S18b, mitochondrial

Chain BL

Peptidyl-tRNA hydrolase ICT1, mitochondrial