HL_7NQL_014

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

7NQL|1|AA|C|576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQL_014 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.343

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NQL|1|AA|G|568
7NQL|1|AA|A|569
7NQL|1|AA|U|570
7NQL|1|AA|A|571
7NQL|1|AA|A|572
7NQL|1|AA|A|573
7NQL|1|AA|C|574
7NQL|1|AA|C|575
7NQL|1|AA|C|576
7NQL|1|AA|C|577

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AI

uS9m

Chain AJ

Mitochondrial ribosomal protein S10

Chain AV

fMet-tRNAMet (P site)