HL_7NQL_019

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

7NQL|1|AA|C|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQL_019 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.2228

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7NQL|1|AA|A|760
7NQL|1|AA|U|761
7NQL|1|AA|G|762
7NQL|1|AA|A|763
7NQL|1|AA|A|764
7NQL|1|AA|A|765
7NQL|1|AA|C|766
7NQL|1|AA|U|767

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33