HL_7NRC_007

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7NRC|1|LA|G|218, 7NRC|1|LA|A|219, 7NRC|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0987

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7NRC|1|LA|G|216
7NRC|1|LA|U|217
7NRC|1|LA|G|218
7NRC|1|LA|A|219
7NRC|1|LA|G|220
7NRC|1|LA|A|221
7NRC|1|LA|A|222
7NRC|1|LA|U|223
7NRC|1|LA|C|224

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A