HL_7NRC_014

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7NRC|1|LA|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0846

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7NRC|1|LA|U|640
7NRC|1|LA|C|641
7NRC|1|LA|U|642
7NRC|1|LA|U|643
7NRC|1|LA|G|644
7NRC|1|LA|A|645
7NRC|1|LA|A|646
7NRC|1|LA|A|647
7NRC|1|LA|C|648
7NRC|1|LA|A|649

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lc

60S ribosomal protein L28

Chain Lg

60S ribosomal protein L32