3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCUCAG
Length
6 nucleotides
Bulged bases
7NRC|1|LA|C|959, 7NRC|1|LA|A|962
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NRC_022 not in the Motif Atlas
Homologous match to HL_8C3A_022
Geometric discrepancy: 0.0922
The information below is about HL_8C3A_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

7NRC|1|LA|C|958
7NRC|1|LA|C|959
7NRC|1|LA|U|960
7NRC|1|LA|C|961
7NRC|1|LA|A|962
7NRC|1|LA|G|963

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain Lc
60S ribosomal protein L28
Chain Ld
60S ribosomal protein L29
Chain Lq
60S ribosomal protein L42-A

Coloring options:


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