HL_7NRC_029
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 7NRC|1|LA|U|1351, 7NRC|1|LA|G|1354, 7NRC|1|LA|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.5334
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|LA|U|1347
7NRC|1|LA|U|1348
7NRC|1|LA|G|1349
7NRC|1|LA|A|1350
7NRC|1|LA|U|1351
7NRC|1|LA|A|1352
7NRC|1|LA|U|1353
7NRC|1|LA|G|1354
7NRC|1|LA|A|1355
7NRC|1|LA|U|1356
7NRC|1|LA|G|1357
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- 60S ribosomal protein L6-B
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lg
- 60S ribosomal protein L32
Coloring options: