3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
7NRC|1|LA|G|1507, 7NRC|1|LA|U|1511
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NRC_032 not in the Motif Atlas
Homologous match to HL_8C3A_032
Geometric discrepancy: 0.0962
The information below is about HL_8C3A_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

7NRC|1|LA|A|1506
7NRC|1|LA|G|1507
7NRC|1|LA|C|1508
7NRC|1|LA|A|1509
7NRC|1|LA|G|1510
7NRC|1|LA|U|1511
7NRC|1|LA|U|1512

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LR
60S ribosomal protein L17-A
Chain LT
60S ribosomal protein L19-A
Chain Ln
60S ribosomal protein L39

Coloring options:


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