HL_7NRC_032
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 7NRC|1|LA|G|1507, 7NRC|1|LA|U|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_032 not in the Motif Atlas
- Homologous match to HL_8C3A_032
- Geometric discrepancy: 0.0962
- The information below is about HL_8C3A_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7NRC|1|LA|A|1506
7NRC|1|LA|G|1507
7NRC|1|LA|C|1508
7NRC|1|LA|A|1509
7NRC|1|LA|G|1510
7NRC|1|LA|U|1511
7NRC|1|LA|U|1512
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LR
- 60S ribosomal protein L17-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Ln
- 60S ribosomal protein L39
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