HL_7NRC_039

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7NRC|1|LA|C|1762, 7NRC|1|LA|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_039 not in the Motif Atlas

Geometric match to HL_7ENI_002

Geometric discrepancy: 0.397

The information below is about HL_7ENI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7NRC|1|LA|C|1759
7NRC|1|LA|A|1760
7NRC|1|LA|C|1761
7NRC|1|LA|C|1762
7NRC|1|LA|U|1763
7NRC|1|LA|U|1764
7NRC|1|LA|U|1765
7NRC|1|LA|G|1766

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LW

60S ribosomal protein L22-A