HL_7NRC_056

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7NRC|1|LA|A|2637, 7NRC|1|LA|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.076

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7NRC|1|LA|U|2633
7NRC|1|LA|U|2634
7NRC|1|LA|A|2635
7NRC|1|LA|A|2636
7NRC|1|LA|A|2637
7NRC|1|LA|C|2638
7NRC|1|LA|G|2639
7NRC|1|LA|A|2640
7NRC|1|LA|U|2641
7NRC|1|LA|A|2642
7NRC|1|LA|A|2643
7NRC|1|LA|C|2644
7NRC|1|LA|G|2645

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29