HL_7NRC_070

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7NRC|1|LA|A|3243, 7NRC|1|LA|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1432

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7NRC|1|LA|C|3240
7NRC|1|LA|G|3241
7NRC|1|LA|G|3242
7NRC|1|LA|A|3243
7NRC|1|LA|A|3244
7NRC|1|LA|A|3245
7NRC|1|LA|G|3246
7NRC|1|LA|G|3247

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A