HL_7NRC_081

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

7NRC|1|S2|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_081 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2591

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7NRC|1|S2|C|190
7NRC|1|S2|C|191
7NRC|1|S2|U|192
7NRC|1|S2|U|193
7NRC|1|S2|U|194
7NRC|1|S2|G|195

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SV

40S ribosomal protein S8-A