HL_7NRC_089

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7NRC|1|S2|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_089 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3391

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7NRC|1|S2|U|450
7NRC|1|S2|A|451
7NRC|1|S2|A|452
7NRC|1|S2|U|453
7NRC|1|S2|U|454
7NRC|1|S2|C|455
7NRC|1|S2|A|456

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain Sd

40S ribosomal protein S24-A