HL_7NRC_090

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

7NRC|1|S2|A|492, 7NRC|1|S2|U|493, 7NRC|1|S2|U|494, 7NRC|1|S2|C|495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_090 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3206

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7NRC|1|S2|C|491
7NRC|1|S2|A|492
7NRC|1|S2|U|493
7NRC|1|S2|U|494
7NRC|1|S2|C|495
7NRC|1|S2|G|496

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains