HL_7NRC_100
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7NRC|1|S2|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_100 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1687
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7NRC|1|S2|G|997
7NRC|1|S2|A|998
7NRC|1|S2|U|999
7NRC|1|S2|C|1000
7NRC|1|S2|A|1001
7NRC|1|S2|G|1002
7NRC|1|S2|A|1003
7NRC|1|S2|U|1004
7NRC|1|S2|A|1005
7NRC|1|S2|C|1006
7NRC|1|S2|C|1007
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- 40S ribosomal protein S26-B
- Chain Sl
- RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')
- Chain Sn
- Transfer RNA; tRNA
Coloring options: