HL_7NRC_110

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_110 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.196

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRC|1|S2|C|1501
7NRC|1|S2|G|1502
7NRC|1|S2|A|1503
7NRC|1|S2|G|1504
7NRC|1|S2|A|1505
7NRC|1|S2|G|1506

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SE

40S ribosomal protein S15

Chain SH

40S ribosomal protein S18-A

Chain SI

40S ribosomal protein S19-A