HL_7NRC_111
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 7NRC|1|S2|U|1557, 7NRC|1|S2|U|1558, 7NRC|1|S2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_111 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1447
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7NRC|1|S2|A|1550
7NRC|1|S2|U|1551
7NRC|1|S2|U|1552
7NRC|1|S2|G|1553
7NRC|1|S2|U|1554
7NRC|1|S2|A|1555
7NRC|1|S2|A|1556
7NRC|1|S2|U|1557
7NRC|1|S2|U|1558
7NRC|1|S2|A|1559
7NRC|1|S2|U|1560
7NRC|1|S2|U|1561
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SE
- 40S ribosomal protein S15
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SM
- 40S ribosomal protein S29-A
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