HL_7NRD_005

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7NRD|1|LA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1571

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7NRD|1|LA|U|194
7NRD|1|LA|U|195
7NRD|1|LA|G|196
7NRD|1|LA|G|197
7NRD|1|LA|A|198
7NRD|1|LA|A|199
7NRD|1|LA|C|200
7NRD|1|LA|A|201

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A