7NRD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7NRD_001 | 1/LA/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7NRD_002 | 1/LA/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7NRD_003 | 1/LA/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7NRD_005 | 1/LA/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7NRD_006 | 1/LA/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7NRD_007 | 1/LA/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7NRD_008 | 1/LA/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7NRD_009 | 1/LA/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7NRD_010 | 1/LA/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7NRD_011 | 1/LA/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7NRD_014 | 1/LA/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7NRD_121 | 1/LA/687:693 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_7NRD_016 | 1/LA/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_7NRD_019 | 1/LA/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7NRD_020 | 1/LA/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_7NRD_021 | 1/LA/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7NRD_022 | 1/LA/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_7NRD_025 | 1/LA/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_7NRD_026 | 1/LA/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7NRD_030 | 1/LA/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7NRD_031 | 1/LA/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7NRD_032 | 1/LA/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7NRD_033 | 1/LA/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7NRD_035 | 1/LA/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_7NRD_036 | 1/LA/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7NRD_037 | 1/LA/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7NRD_038 | 1/LA/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7NRD_040 | 1/LA/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7NRD_041 | 1/LA/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7NRD_123 | 1/LA/1862:1868 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_7NRD_043 | 1/LA/1923:1928 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7NRD_045 | 1/LA/2110:2114 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_7NRD_046 | 1/LA/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7NRD_047 | 1/LA/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7NRD_048 | 1/LA/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7NRD_050 | 1/LA/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7NRD_051 | 1/LA/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_7NRD_055 | 1/LA/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_7NRD_056 | 1/LA/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7NRD_058 | 1/LA/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7NRD_059 | 1/LA/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7NRD_060 | 1/LA/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7NRD_061 | 1/LA/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7NRD_062 | 1/LA/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7NRD_063 | 1/LA/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7NRD_064 | 1/LA/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_7NRD_065 | 1/LA/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7NRD_067 | 1/LA/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7NRD_068 | 1/LA/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7NRD_070 | 1/LA/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_7NRD_071 | 1/LA/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7NRD_124 | 1/LB/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7NRD_073 | 1/LB/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7NRD_075 | 1/LC/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_7NRD_076 | 1/LC/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_7NRD_077 | 1/LC/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7NRD_078 | 1/LC/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_7NRD_079 | 1/S2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_7NRD_081 | 1/S2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7NRD_084 | 1/S2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7NRD_086 | 1/S2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7NRD_087 | 1/S2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7NRD_088 | 1/S2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7NRD_089 | 1/S2/414:419 | UNCG | geometric HL_4U7U_001 HL_61337.1 | |
| HL_7NRD_090 | 1/S2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7NRD_092 | 1/S2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7NRD_093 | 1/S2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7NRD_095 | 1/S2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7NRD_096 | 1/S2/777:783 | No text annotation | ||
| HL_7NRD_098 | 1/S2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7NRD_099 | 1/S2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_7NRD_100 | 1/S2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7NRD_102 | 1/S2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_7NRD_103 | 1/S2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_7NRD_104 | 1/S2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7NRD_105 | 1/S2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_7NRD_106 | 1/S2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_7NRD_107 | 1/S2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7NRD_109 | 1/S2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_7NRD_110 | 1/S2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_7NRD_111 | 1/S2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_7NRD_112 | 1/S2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7NRD_114 | 1/S2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7NRD_116 | 1/Sm/32:40 | tRNA anticodon loop | homologous HL_6UFG_007 NA | |
| HL_7NRD_119 | 1/Sn/31:39 | No text annotation | homologous HL_1YFG_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7NRD_004 | No text annotation | ||
| HL_7NRD_012 | No text annotation | ||
| HL_7NRD_013 | GNRA | ||
| HL_7NRD_015 | No text annotation | ||
| HL_7NRD_017 | GNRA | ||
| HL_7NRD_018 | No text annotation | ||
| HL_7NRD_023 | GNRA | ||
| HL_7NRD_024 | No text annotation | ||
| HL_7NRD_027 | UNCG variation | ||
| HL_7NRD_028 | No text annotation | ||
| HL_7NRD_029 | No text annotation | ||
| HL_7NRD_034 | No text annotation | ||
| HL_7NRD_039 | No text annotation | ||
| HL_7NRD_122 | No text annotation | ||
| HL_7NRD_042 | Anticodon loop related | ||
| HL_7NRD_044 | No text annotation | ||
| HL_7NRD_049 | No text annotation | ||
| HL_7NRD_052 | No text annotation | ||
| HL_7NRD_053 | No text annotation | ||
| HL_7NRD_054 | No text annotation | ||
| HL_7NRD_057 | No text annotation | ||
| HL_7NRD_066 | GNRA | ||
| HL_7NRD_069 | No text annotation | ||
| HL_7NRD_072 | Mini UNCG | ||
| HL_7NRD_074 | GNRA | ||
| HL_7NRD_080 | No text annotation | ||
| HL_7NRD_082 | No text annotation | ||
| HL_7NRD_083 | No text annotation | ||
| HL_7NRD_085 | No text annotation | ||
| HL_7NRD_091 | No text annotation | ||
| HL_7NRD_094 | No text annotation | ||
| HL_7NRD_097 | No text annotation | ||
| HL_7NRD_101 | No text annotation | ||
| HL_7NRD_108 | No text annotation | ||
| HL_7NRD_113 | No text annotation | ||
| HL_7NRD_115 | No text annotation | ||
| HL_7NRD_117 | T-loop with 2 stacked bulged bases | ||
| HL_7NRD_118 | No text annotation | ||
| HL_7NRD_120 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7NRD_002 | 1/LA/7:8, 1/LC/150:152 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_7NRD_004 | 1/LA/27:28, 1/LA/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7NRD_005 | 1/LA/31:38, 1/LA/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_7NRD_006 | 1/LA/82:89, 1/LA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_7NRD_007 | 1/LA/123:124, 1/LA/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7NRD_013 | 1/LA/189:191, 1/LA/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7NRD_014 | 1/LA/337:339, 1/LC/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7NRD_015 | 1/LA/376:379, 1/LA/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7NRD_016 | 1/LA/404:410, 1/LC/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7NRD_017 | 1/LA/429:431, 1/LA/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7NRD_019 | 1/LA/512:513, 1/LA/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7NRD_020 | 1/LA/517:525, 1/LA/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7NRD_022 | 1/LA/668:670, 1/LA/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_7NRD_023 | 1/LA/680:684, 1/LA/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7NRD_024 | 1/LA/725:728, 1/LA/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7NRD_025 | 1/LA/752:753, 1/LA/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7NRD_026 | 1/LA/755:756, 1/LA/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_7NRD_028 | 1/LA/803:805, 1/LA/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7NRD_029 | 1/LA/805:809, 1/LA/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_7NRD_030 | 1/LA/833:838, 1/LA/855:861 | No text annotation | geometric IL_4V88_462 NA | |
| IL_7NRD_235 | 1/LA/869:872, 1/LA/888:890 | No text annotation | homologous IL_8P9A_259 IL_36931.1 | |
| IL_7NRD_032 | 1/LA/873:875, 1/LA/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7NRD_033 | 1/LA/907:909, 1/LA/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7NRD_034 | 1/LA/954:956, 1/LA/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7NRD_035 | 1/LA/969:970, 1/LA/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7NRD_036 | 1/LA/977:982, 1/LA/1101:1104 | No text annotation | ||
| IL_7NRD_037 | 1/LA/983:985, 1/LA/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7NRD_038 | 1/LA/991:997, 1/LA/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_7NRD_039 | 1/LA/997:998, 1/LA/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7NRD_040 | 1/LA/999:1004, 1/LA/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_7NRD_041 | 1/LA/1006:1009, 1/LA/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7NRD_046 | 1/LA/1120:1122, 1/LA/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7NRD_047 | 1/LA/1167:1171, 1/LA/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7NRD_048 | 1/LA/1173:1180, 1/LA/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_7NRD_049 | 1/LA/1180:1182, 1/LA/1324:1325 | Single bulged U | geometric IL_7A0S_035 IL_97561.1 | |
| IL_7NRD_050 | 1/LA/1187:1194, 1/LA/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7NRD_051 | 1/LA/1194:1205, 1/LA/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7NRD_056 | 1/LA/1376:1378, 1/LA/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7NRD_057 | 1/LA/1385:1387, 1/LA/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7NRD_058 | 1/LA/1388:1395, 1/LA/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7NRD_059 | 1/LA/1398:1400, 1/LA/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7NRD_060 | 1/LA/1444:1450, 1/LA/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7NRD_237 | 1/LA/1501:1505, 1/LA/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_7NRD_062 | 1/LA/1532:1536, 1/LA/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7NRD_065 | 1/LA/1623:1624, 1/LA/1819:1822 | Multiple bulged bases | geometric IL_4V9F_021 IL_71421.1 | |
| IL_7NRD_066 | 1/LA/1627:1631, 1/LA/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_7NRD_067 | 1/LA/1645:1649, 1/LA/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_7NRD_068 | 1/LA/1661:1663, 1/LA/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7NRD_069 | 1/LA/1669:1670, 1/LA/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7NRD_070 | 1/LA/1670:1671, 1/LA/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7NRD_071 | 1/LA/1694:1698, 1/LA/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7NRD_072 | 1/LA/1702:1707, 1/LA/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_7NRD_073 | 1/LA/1711:1717, 1/LA/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7NRD_074 | 1/LA/1883:1889, 1/LA/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_7NRD_075 | 1/LA/1895:1897, 1/LA/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7NRD_076 | 1/LA/1898:1901, 1/LA/2336:2337 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_74641.1 | |
| IL_7NRD_238 | 1/LA/1898:1906, 1/LA/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7NRD_077 | 1/LA/1901:1906, 1/LA/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7NRD_078 | 1/LA/1918:1923, 1/LA/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7NRD_079 | 1/LA/1940:1942, 1/LA/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7NRD_082 | 1/LA/2128:2129, 1/LA/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_7NRD_083 | 1/LA/2156:2161, 1/LA/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7NRD_084 | 1/LA/2196:2199, 1/LA/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7NRD_085 | 1/LA/2200:2201, 1/LA/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7NRD_086 | 1/LA/2204:2206, 1/LA/2237:2238 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7NRD_240 | 1/LA/2204:2210, 1/LA/2235:2238 | No text annotation | ||
| IL_7NRD_087 | 1/LA/2206:2210, 1/LA/2235:2237 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_7NRD_088 | 1/LA/2211:2217, 1/LA/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7NRD_089 | 1/LA/2276:2277, 1/LA/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7NRD_090 | 1/LA/2277:2288, 1/LA/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7NRD_091 | 1/LA/2391:2394, 1/LA/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_7NRD_092 | 1/LA/2396:2398, 1/LA/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_7NRD_093 | 1/LA/2409:2411, 1/LA/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7NRD_094 | 1/LA/2412:2413, 1/LA/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7NRD_095 | 1/LA/2423:2425, 1/LA/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_7NRD_097 | 1/LA/2520:2526, 1/LA/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7NRD_098 | 1/LA/2614:2615, 1/LA/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7NRD_099 | 1/LA/2666:2668, 1/LA/2686:2690 | Isolated tHS basepair with bulges | geometric IL_4V9F_080 IL_14250.1 | |
| IL_7NRD_100 | 1/LA/2718:2721, 1/LA/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7NRD_101 | 1/LA/2770:2773, 1/LA/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_7NRD_102 | 1/LA/2823:2824, 1/LA/2865:2867 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7NRD_103 | 1/LA/2824:2828, 1/LA/2862:2865 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7NRD_104 | 1/LA/2828:2830, 1/LA/2858:2862 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.1 | |
| IL_7NRD_105 | 1/LA/2835:2839, 1/LA/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_7NRD_106 | 1/LA/2876:2877, 1/LA/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7NRD_107 | 1/LA/2879:2881, 1/LA/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_7NRD_108 | 1/LA/2881:2882, 1/LA/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7NRD_109 | 1/LA/2889:2891, 1/LA/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7NRD_242 | 1/LA/2889:2892, 1/LA/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_7NRD_110 | 1/LA/2891:2892, 1/LA/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_7NRD_111 | 1/LA/2918:2920, 1/LA/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5Y7M_007 IL_01003.1 | |
| IL_7NRD_112 | 1/LA/2960:2961, 1/LA/2970:2972 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7NRD_113 | 1/LA/3004:3007, 1/LA/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7NRD_114 | 1/LA/3012:3014, 1/LA/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7NRD_115 | 1/LA/3018:3025, 1/LA/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7NRD_116 | 1/LA/3047:3051, 1/LA/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7NRD_117 | 1/LA/3054:3059, 1/LA/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7NRD_118 | 1/LA/3063:3064, 1/LA/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7NRD_119 | 1/LA/3103:3107, 1/LA/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7NRD_123 | 1/LA/3177:3179, 1/LA/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_7NRD_124 | 1/LA/3179:3188, 1/LA/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_7NRD_129 | 1/LA/3300:3303, 1/LA/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7NRD_132 | 1/LA/3328:3330, 1/LA/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7NRD_133 | 1/LA/3332:3337, 1/LA/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7NRD_134 | 1/LA/3340:3342, 1/LA/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_7NRD_135 | 1/LA/3342:3345, 1/LA/3360:3363 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_7NRD_137 | 1/LB/15:16, 1/LB/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7NRD_141 | 1/LB/32:36, 1/LB/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_7NRD_142 | 1/LB/72:80, 1/LB/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7NRD_143 | 1/LB/84:87, 1/LB/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7NRD_144 | 1/LC/64:66, 1/LC/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_7NRD_145 | 1/LC/68:69, 1/LC/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_7NRD_146 | 1/S2/24:26, 1/S2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_7NRD_147 | 1/S2/35:37, 1/S2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_7NRD_148 | 1/S2/42:48, 1/S2/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_7NRD_149 | 1/S2/50:52, 1/S2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7NRD_150 | 1/S2/58:63, 1/S2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7NRD_151 | 1/S2/64:69, 1/S2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7NRD_152 | 1/S2/109:112, 1/S2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_7NRD_153 | 1/S2/113:116, 1/S2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_7NRD_154 | 1/S2/117:122, 1/S2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7NRD_155 | 1/S2/143:149, 1/S2/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_7NRD_156 | 1/S2/150:152, 1/S2/162:164 | Isolated cWH basepair | geometric IL_6RA4_002 NA | |
| IL_7NRD_158 | 1/S2/204:206, 1/S2/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_7NRD_159 | 1/S2/206:208, 1/S2/257:259 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_7NRD_162 | 1/S2/311:316, 1/S2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7NRD_163 | 1/S2/318:323, 1/S2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_7NRD_164 | 1/S2/363:365, 1/S2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7NRD_165 | 1/S2/389:391, 1/S2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7NRD_166 | 1/S2/411:414, 1/S2/419:422 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_7NRD_167 | 1/S2/439:441, 1/S2/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_7NRD_168 | 1/S2/443:447, 1/S2/460:461 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_7NRD_244 | 1/S2/443:448, 1/S2/458:461 | No text annotation | ||
| IL_7NRD_169 | 1/S2/447:448, 1/S2/458:460 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7NRD_171 | 1/S2/517:518, 1/S2/533:535 | Minor groove platform | geometric IL_4LFB_004 IL_34520.1 | |
| IL_7NRD_172 | 1/S2/518:520, 1/S2/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_7NRD_173 | 1/S2/550:557, 1/S2/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_7NRD_174 | 1/S2/557:559, 1/S2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_7NRD_175 | 1/S2/562:568, 1/S2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7NRD_176 | 1/S2/616:622, 1/S2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7NRD_177 | 1/S2/624:626, 1/S2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7NRD_178 | 1/S2/627:631, 1/S2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7NRD_183 | 1/S2/746:747, 1/S2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7NRD_184 | 1/S2/748:750, 1/S2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7NRD_185 | 1/S2/751:759, 1/S2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_7NRD_186 | 1/S2/816:822, 1/S2/850:857 | No text annotation | ||
| IL_7NRD_187 | 1/S2/865:866, 1/S2/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7NRD_248 | 1/S2/868:869, 1/S2/958:960 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_7NRD_249 | 1/S2/871:873, 1/S2/954:956 | Isolated non-canonical cWW pair | geometric IL_8D29_001 IL_01003.1 | |
| IL_7NRD_190 | 1/S2/874:878, 1/S2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7NRD_191 | 1/S2/885:888, 1/S2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7NRD_192 | 1/S2/893:899, 1/S2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_7NRD_193 | 1/S2/985:990, 1/S2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_7NRD_194 | 1/S2/990:994, 1/S2/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_7NRD_195 | 1/S2/1034:1036, 1/S2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7NRD_196 | 1/S2/1041:1044, 1/S2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7NRD_197 | 1/S2/1051:1053, 1/S2/1066:1067 | Single bulged U | geometric IL_3WBM_001 NA | |
| IL_7NRD_198 | 1/S2/1111:1118, 1/S2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7NRD_199 | 1/S2/1146:1147, 1/S2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7NRD_200 | 1/S2/1149:1151, 1/S2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7NRD_201 | 1/S2/1157:1160, 1/S2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_7NRD_202 | 1/S2/1173:1175, 1/S2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7NRD_203 | 1/S2/1178:1179, 1/S2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7NRD_204 | 1/S2/1213:1215, 1/S2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_7NRD_207 | 1/S2/1268:1270, 1/S2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7NRD_251 | 1/S2/1272:1275, 1/S2/1437:1438 | Multiple bulged bases | geometric IL_1FUF_002 NA | |
| IL_7NRD_209 | 1/S2/1276:1278, 1/S2/1430:1436 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7NRD_210 | 1/S2/1280:1281, 1/S2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7NRD_211 | 1/S2/1290:1292, 1/S2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7NRD_212 | 1/S2/1306:1308, 1/S2/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_7NRD_252 | 1/S2/1335:1337, 1/S2/1415:1416 | Single stack bend | geometric IL_7KGA_003 NA | |
| IL_7NRD_213 | 1/S2/1339:1342, 1/S2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_7NRD_214 | 1/S2/1345:1348, 1/S2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7NRD_216 | 1/S2/1389:1391, 1/S2/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_7NRD_217 | 1/S2/1480:1487, 1/S2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_7NRD_218 | 1/S2/1488:1494, 1/S2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_7NRD_219 | 1/S2/1495:1498, 1/S2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_7NRD_220 | 1/S2/1540:1545, 1/S2/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
| IL_7NRD_221 | 1/S2/1636:1638, 1/S2/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_7NRD_222 | 1/S2/1638:1641, 1/S2/1760:1764 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_7NRD_223 | 1/S2/1642:1644, 1/S2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_7NRD_224 | 1/S2/1644:1647, 1/S2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_28833.1 | |
| IL_7NRD_225 | 1/S2/1650:1652, 1/S2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7NRD_226 | 1/S2/1653:1656, 1/S2/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7NRD_227 | 1/S2/1656:1658, 1/S2/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_7NRD_228 | 1/S2/1665:1667, 1/S2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7NRD_229 | 1/S2/1669:1672, 1/S2/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7NRD_230 | 1/S2/1672:1674, 1/S2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_7NRD_231 | 1/S2/1675:1678, 1/S2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_7NRD_232 | 1/S2/1678:1682, 1/S2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7NRD_001 | No text annotation | ||
| IL_7NRD_003 | Single bulged U | ||
| IL_7NRD_008 | Isolated non-canonical cWW pair | ||
| IL_7NRD_009 | No text annotation | ||
| IL_7NRD_010 | No text annotation | ||
| IL_7NRD_011 | Isolated non-canonical cWW pair | ||
| IL_7NRD_012 | No text annotation | ||
| IL_7NRD_018 | No text annotation | ||
| IL_7NRD_021 | No text annotation | ||
| IL_7NRD_027 | No text annotation | ||
| IL_7NRD_031 | No text annotation | ||
| IL_7NRD_042 | Isolated non-canonical cWW pair | ||
| IL_7NRD_043 | Decoding loop related | ||
| IL_7NRD_236 | No text annotation | ||
| IL_7NRD_044 | Isolated non-canonical cWW pair | ||
| IL_7NRD_045 | Single bulged G | ||
| IL_7NRD_052 | Single bulged U | ||
| IL_7NRD_053 | Kink-turn | ||
| IL_7NRD_054 | No text annotation | ||
| IL_7NRD_055 | Major groove platform with extra cWW | ||
| IL_7NRD_061 | No text annotation | ||
| IL_7NRD_063 | Single stack bend | ||
| IL_7NRD_064 | No text annotation | ||
| IL_7NRD_080 | No text annotation | ||
| IL_7NRD_081 | Single stack bend | ||
| IL_7NRD_239 | Isolated non-canonical cWW with bulges | ||
| IL_7NRD_096 | No text annotation | ||
| IL_7NRD_241 | No text annotation | ||
| IL_7NRD_120 | Single stack bend | ||
| IL_7NRD_121 | Isolated non-canonical cWW pair | ||
| IL_7NRD_122 | Isolated non-canonical cWW pair | ||
| IL_7NRD_125 | Single bulged U | ||
| IL_7NRD_126 | No text annotation | ||
| IL_7NRD_127 | Isolated non-canonical cWW pair | ||
| IL_7NRD_128 | Tandem non-canonical cWW pairs | ||
| IL_7NRD_130 | Single bulged U | ||
| IL_7NRD_131 | Single bulged U | ||
| IL_7NRD_136 | Multiple bulged bases | ||
| IL_7NRD_138 | Minor groove platform related | ||
| IL_7NRD_139 | Minor groove platform | ||
| IL_7NRD_140 | Single stack bend | ||
| IL_7NRD_157 | Double sheared | ||
| IL_7NRD_160 | No text annotation | ||
| IL_7NRD_161 | Single bulged U | ||
| IL_7NRD_243 | No text annotation | ||
| IL_7NRD_170 | No text annotation | ||
| IL_7NRD_253 | No text annotation | ||
| IL_7NRD_179 | Isolated non-canonical cWW pair | ||
| IL_7NRD_180 | Single stack bend | ||
| IL_7NRD_181 | Single stack bend | ||
| IL_7NRD_182 | No text annotation | ||
| IL_7NRD_245 | No text annotation | ||
| IL_7NRD_246 | Tandem non-canonical cWW pairs | ||
| IL_7NRD_247 | Isolated cWH basepair | ||
| IL_7NRD_188 | No text annotation | ||
| IL_7NRD_189 | Tandem non-canonical cWW pairs | ||
| IL_7NRD_250 | No text annotation | ||
| IL_7NRD_205 | No text annotation | ||
| IL_7NRD_206 | No text annotation | ||
| IL_7NRD_208 | Tandem non-canonical cWW pairs | ||
| IL_7NRD_215 | Isolated non-canonical cWW pair | ||
| IL_7NRD_233 | No text annotation | ||
| IL_7NRD_234 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7NRD_001 | 1/LA/113:123, 1/LA/149:158, 1/LA/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7NRD_031 | 1/LA/113:124, 1/LA/144:158, 1/LA/263:267 | No text annotation | ||
| J3_7NRD_032 | 1/LA/185:189, 1/LA/205:214, 1/LA/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_7NRD_033 | 1/LA/340:356, 1/LA/363:368, 1/LC/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7NRD_002 | 1/LA/369:376, 1/LA/403:404, 1/LC/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7NRD_034 | 1/LA/369:379, 1/LA/390:404, 1/LC/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7NRD_003 | 1/LA/502:503, 1/LA/588:597, 1/LA/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7NRD_004 | 1/LA/814:820, 1/LA/905:907, 1/LA/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7NRD_005 | 1/LA/828:831, 1/LA/863:867, 1/LA/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7NRD_006 | 1/LA/986:987, 1/LA/1062:1066, 1/LA/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_7NRD_008 | 1/LA/1479:1485, 1/LA/1857:1859, 1/LA/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7NRD_009 | 1/LA/1488:1491, 1/LA/1837:1843, 1/LA/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7NRD_010 | 1/LA/1526:1531, 1/LA/1591:1595, 1/LA/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7NRD_035 | 1/LA/1537:1542, 1/LA/1551:1561, 1/LA/1579:1584 | No text annotation | ||
| J3_7NRD_011 | 1/LA/1631:1632, 1/LA/1641:1645, 1/LA/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7NRD_036 | 1/LA/1654:1658, 1/LA/1791:1792, 1/LA/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7NRD_012 | 1/LA/2432:2435, 1/LA/2512:2517, 1/LA/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_7NRD_013 | 1/LA/2529:2532, 1/LA/2547:2563, 1/LA/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_7NRD_037 | 1/LA/2651:2653, 1/LA/2754:2765, 1/LA/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7NRD_014 | 1/LA/2664:2666, 1/LA/2690:2692, 1/LA/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_7NRD_015 | 1/LA/2886:2889, 1/LA/2914:2916, 1/LA/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7NRD_038 | 1/LA/3171:3176, 1/LA/3212:3220, 1/LA/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7NRD_018 | 1/LC/44:45, 1/LC/58:64, 1/LC/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7NRD_039 | 1/S2/37:42, 1/S2/433:439, 1/S2/464:471 | No text annotation | ||
| J3_7NRD_040 | 1/S2/37:48, 1/S2/431:439, 1/S2/464:471 | No text annotation | ||
| J3_7NRD_041 | 1/S2/213:228, 1/S2/237:243, 1/S2/250:252 | No text annotation | ||
| J3_7NRD_019 | 1/S2/633:635, 1/S2/861:865, 1/S2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7NRD_042 | 1/S2/633:635, 1/S2/861:866, 1/S2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_7NRD_020 | 1/S2/760:763, 1/S2/773:775, 1/S2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7NRD_021 | 1/S2/881:884, 1/S2/928:936, 1/S2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7NRD_022 | 1/S2/1037:1039, 1/S2/1079:1083, 1/S2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_7NRD_023 | 1/S2/1161:1164, 1/S2/1581:1587, 1/S2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7NRD_024 | 1/S2/1168:1171, 1/S2/1468:1470, 1/S2/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7NRD_025 | 1/S2/1180:1187, 1/S2/1198:1209, 1/S2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7NRD_026 | 1/S2/1215:1220, 1/S2/1263:1267, 1/S2/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7NRD_027 | 1/S2/1283:1288, 1/S2/1327:1332, 1/S2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7NRD_028 | 1/S2/1293:1294, 1/S2/1303:1306, 1/S2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7NRD_043 | 1/S2/1337:1338, 1/S2/1386:1389, 1/S2/1412:1415 | No text annotation | ||
| J3_7NRD_044 | 1/S2/1337:1338, 1/S2/1386:1391, 1/S2/1407:1415 | No text annotation | ||
| J3_7NRD_030 | 1/S2/1470:1474, 1/S2/1533:1540, 1/S2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J4_7NRD_001 | 1/LA/112:113, 1/LA/267:272, 1/LA/293:299, 1/LA/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7NRD_002 | 1/LA/185:189, 1/LA/205:208, 1/LA/212:214, 1/LA/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_7NRD_003 | 1/LA/1451:1457, 1/LA/1475:1476, 1/LA/1877:1880, 1/LA/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_7NRD_004 | 1/LA/1492:1496, 1/LA/1520:1525, 1/LA/1614:1615, 1/LA/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_7NRD_005 | 1/LA/1674:1675, 1/LA/1693:1694, 1/LA/1752:1753, 1/LA/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7NRD_006 | 1/LA/2130:2134, 1/LA/2146:2150, 1/LA/2186:2190, 1/LA/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7NRD_007 | 1/LA/2192:2194, 1/LA/2248:2249, 1/LA/2267:2276, 1/LA/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7NRD_008 | 1/LA/2654:2658, 1/LA/2712:2716, 1/LA/2740:2742, 1/LA/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7NRD_009 | 1/LA/3010:3012, 1/LA/3042:3043, 1/LA/3098:3100, 1/LA/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_7NRD_010 | 1/S2/99:107, 1/S2/307:309, 1/S2/357:361, 1/S2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7NRD_011 | 1/S2/622:624, 1/S2/975:980, 1/S2/1021:1032, 1/S2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_7NRD_001 | 1/LA/20:22, 1/LC/35:42, 1/LC/102:107, 1/LC/115:116, 1/LC/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_7NRD_002 | 1/LA/658:663, 1/LA/799:802, 1/LA/941:944, 1/LA/1375:1376, 1/LA/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_7NRD_003 | 1/LA/675:678, 1/LA/702:706, 1/LA/713:721, 1/LA/749:751, 1/LA/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_7NRD_004 | 1/LA/1906:1914, 1/LA/1938:1939, 1/LA/2109:2110, 1/LA/2114:2122, 1/LA/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7NRD_005 | 1/LA/2399:2406, 1/LA/2815:2823, 1/LA/2867:2876, 1/LA/2951:2957, 1/LA/2975:2980 | No text annotation | ||
| J5_7NRD_006 | 1/LA/2416:2419, 1/LA/2611:2614, 1/LA/2627:2628, 1/LA/2650:2651, 1/LA/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_7NRD_007 | 1/S2/31:35, 1/S2/473:479, 1/S2/509:516, 1/S2/536:546, 1/S2/592:595 | No text annotation | ||
| J5_7NRD_008 | 1/S2/54:57, 1/S2/90:97, 1/S2/386:388, 1/S2/409:411, 1/S2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7NRD_009 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:267, 1/S2/288:293 | No text annotation | ||
| J5_7NRD_011 | 1/S2/636:642, 1/S2/692:698, 1/S2/740:744, 1/S2/807:816, 1/S2/857:860 | No text annotation | ||
| J6_7NRD_001 | 1/LA/22:27, 1/LA/58:68, 1/LA/75:79, 1/LA/106:110, 1/LA/321:331, 1/LC/32:35 | No text annotation | ||
| J6_7NRD_002 | 1/LA/2416:2419, 1/LA/2611:2614, 1/LA/2627:2628, 1/LA/2650:2653, 1/LA/2754:2765, 1/LA/2793:2804 | No text annotation | ||
| J7_7NRD_001 | 1/LA/949:954, 1/LA/967:968, 1/LA/1114:1117, 1/LA/1141:1146, 1/LA/1157:1161, 1/LA/1338:1339, 1/LA/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7NRD_007 | No text annotation | ||
| J3_7NRD_016 | No text annotation | ||
| J3_7NRD_017 | No text annotation | ||
| J3_7NRD_029 | No text annotation | ||
| J4_7NRD_012 | tRNA junction | ||
| J4_7NRD_013 | No text annotation | ||
| J5_7NRD_010 | No text annotation |
Coloring options: