Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7NRD_0011/LA/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_7NRD_0021/LA/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7NRD_0031/LA/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_7NRD_0041/LA/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_7NRD_0051/LA/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7NRD_0061/LA/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7NRD_0071/LA/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7NRD_0081/LA/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7NRD_0091/LA/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7NRD_0101/LA/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7NRD_0111/LA/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7NRD_0121/LA/544:547No text annotation
HL_7NRD_0131/LA/599:604GNRA
homologous
HL_5TBW_013
NA
HL_7NRD_0141/LA/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7NRD_1211/LA/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_7NRD_0161/LA/707:712GNRA
homologous
HL_5TBW_016
NA
HL_7NRD_0171/LA/732:737GNRA
homologous
HL_5TBW_017
NA
HL_7NRD_0181/LA/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_7NRD_0191/LA/844:849GNRA
homologous
HL_5TBW_019
NA
HL_7NRD_0201/LA/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_7NRD_0211/LA/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_7NRD_0221/LA/958:963Externally structured
homologous
HL_5TBW_022
NA
HL_7NRD_0231/LA/1023:1029GNRA
homologous
HL_5TBW_023
NA
HL_7NRD_0241/LA/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_7NRD_0251/LA/1126:1132GNRA
homologous
HL_5TBW_025
NA
HL_7NRD_0261/LA/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7NRD_0271/LA/1239:1249UNCG variation
geometric
HL_1P6V_001
HL_53890.2
HL_7NRD_0281/LA/1266:1275No text annotation
geometric
HL_5TBW_028
NA
HL_7NRD_0291/LA/1347:1357No text annotation
homologous
HL_5TBW_029
NA
HL_7NRD_0301/LA/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7NRD_0311/LA/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7NRD_0321/LA/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_7NRD_0331/LA/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_7NRD_0341/LA/1565:1574No text annotation
HL_7NRD_0351/LA/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_7NRD_0361/LA/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_7NRD_0371/LA/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_7NRD_0381/LA/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_7NRD_1221/LA/1760:1765No text annotation
homologous
HL_8C3A_039
NA
HL_7NRD_0401/LA/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_7NRD_0411/LA/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_7NRD_1231/LA/1862:1868GNRA
homologous
HL_8P9A_153
HL_37824.8
HL_7NRD_0431/LA/1923:1928No text annotation
geometric
HL_7RQB_042
NA
HL_7NRD_0451/LA/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_7NRD_0461/LA/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_7NRD_0471/LA/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_7NRD_0481/LA/2220:2225GNRA
homologous
HL_8C3A_048
NA
HL_7NRD_0491/LA/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_7NRD_0501/LA/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_7NRD_0511/LA/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_7NRD_0531/LA/2535:2544No text annotation
HL_7NRD_0541/LA/2568:2573No text annotation
HL_7NRD_0551/LA/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_7NRD_0561/LA/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_7NRD_0571/LA/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_7NRD_0581/LA/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7NRD_0591/LA/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_7NRD_0601/LA/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_7NRD_0611/LA/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_7NRD_0621/LA/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_7NRD_0631/LA/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_7NRD_0641/LA/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_7NRD_0651/LA/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_7NRD_0661/LA/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_7NRD_0671/LA/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7NRD_0681/LA/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7NRD_0691/LA/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_7NRD_0701/LA/3240:3247No text annotation
homologous
HL_8P9A_180
HL_07886.3
HL_7NRD_0711/LA/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_7NRD_0721/LA/3350:3353Mini UNCG
geometric
HL_4V88_192
NA
HL_7NRD_1241/LB/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7NRD_0731/LB/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7NRD_0741/LB/88:93GNRA
homologous
HL_4V9F_072
HL_37824.8
HL_7NRD_0751/LC/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_7NRD_0761/LC/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_7NRD_0771/LC/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_7NRD_0781/LC/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_7NRD_0791/S2/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_7NRD_0801/S2/70:81No text annotation
homologous
HL_4V88_187
NA
HL_7NRD_0811/S2/154:160GNRA related
homologous
HL_4V88_188
NA
HL_7NRD_0821/S2/190:195No text annotation
homologous
HL_4V88_189
NA
HL_7NRD_0831/S2/228:237No text annotation
HL_7NRD_0841/S2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_7NRD_0851/S2/276:279No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_7NRD_0861/S2/330:338GNRA related
homologous
HL_4V88_193
NA
HL_7NRD_0871/S2/368:373No text annotation
homologous
HL_4V88_194
NA
HL_7NRD_0881/S2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_7NRD_0891/S2/414:419UNCG
geometric
HL_4U7U_001
HL_34617.5
HL_7NRD_0901/S2/450:456No text annotation
homologous
HL_4V88_197
NA
HL_7NRD_0911/S2/491:496No text annotation
homologous
HL_4V88_198
NA
HL_7NRD_0921/S2/520:532No text annotation
geometric
HL_4V88_199
NA
HL_7NRD_0931/S2/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_7NRD_0941/S2/716:722No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_7NRD_0951/S2/764:772No text annotation
homologous
HL_4V88_203
NA
HL_7NRD_0961/S2/777:783No text annotation
HL_7NRD_0971/S2/827:845No text annotation
homologous
HL_8P9A_208
NA
HL_7NRD_0981/S2/900:909No text annotation
homologous
HL_4V88_206
NA
HL_7NRD_0991/S2/937:942GNRA
homologous
HL_4V88_207
NA
HL_7NRD_1001/S2/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_7NRD_1011/S2/1055:1064No text annotation
homologous
HL_8P9A_212
HL_97917.2
HL_7NRD_1021/S2/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_7NRD_1031/S2/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_7NRD_1041/S2/1188:1197No text annotation
homologous
HL_4V88_212
NA
HL_7NRD_1051/S2/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_7NRD_1061/S2/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_7NRD_1071/S2/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_7NRD_1081/S2/1359:1364No text annotation
homologous
HL_4V88_216
NA
HL_7NRD_1091/S2/1396:1402GNRA
homologous
HL_4V88_217
NA
HL_7NRD_1101/S2/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_7NRD_1111/S2/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_7NRD_1121/S2/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_7NRD_1131/S2/1698:1703No text annotation
HL_7NRD_1141/S2/1778:1783GNRA variation
homologous
HL_4V88_222
NA
HL_7NRD_1151/Sm/13:23No text annotation
homologous
HL_4LCK_001
NA
HL_7NRD_1161/Sm/32:40tRNA anticodon loop
homologous
HL_6UFG_007
HL_06059.7
HL_7NRD_1171/Sm/54:62T-loop with 2 stacked bulged bases
homologous
HL_5WT1_003
HL_28252.9
HL_7NRD_1181/Sn/13:22No text annotation
homologous
HL_1YFG_001
NA
HL_7NRD_1191/Sn/31:39No text annotation
homologous
HL_1YFG_002
NA
HL_7NRD_1201/Sn/53:61T-loop with 2 stacked bulged bases
homologous
HL_1QU2_003
HL_28252.9

Problematic loops

#loop idProblemSequence
HL_7NRD_015No text annotation
HL_7NRD_039No text annotation
HL_7NRD_042Anticodon loop related
HL_7NRD_044No text annotation
HL_7NRD_052No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7NRD_0021/LA/7:8,
1/LC/150:152
Single bulged C
homologous
IL_5TBW_002
NA
IL_7NRD_0031/LA/13:15,
1/LC/144:145
Single bulged U
homologous
IL_5TBW_003
NA
IL_7NRD_0041/LA/27:28,
1/LA/56:58
No text annotation
homologous
IL_8C3A_004
NA
IL_7NRD_0051/LA/31:38,
1/LA/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_7NRD_0061/LA/82:89,
1/LA/97:103
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_7NRD_0071/LA/123:124,
1/LA/144:149
No text annotation
homologous
IL_8C3A_007
NA
IL_7NRD_0081/LA/125:127,
1/LA/141:143
Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7NRD_0091/LA/163:167,
1/LA/255:258
No text annotation
homologous
IL_8C3A_009
NA
IL_7NRD_0101/LA/169:171,
1/LA/247:253
No text annotation
IL_7NRD_0111/LA/171:173,
1/LA/245:247
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7NRD_0121/LA/177:178,
1/LA/238:241
No text annotation
geometric
IL_5TBW_501
NA
IL_7NRD_0131/LA/189:191,
1/LA/204:205
Single bulged U
homologous
IL_8C3A_013
NA
IL_7NRD_0141/LA/337:339,
1/LC/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_7NRD_0151/LA/376:379,
1/LA/390:403
No text annotation
geometric
IL_5TBW_014
NA
IL_7NRD_0161/LA/404:410,
1/LC/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7NRD_0171/LA/429:431,
1/LA/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7NRD_0191/LA/512:513,
1/LA/577:579
Single bulged A
homologous
IL_8C3A_020
NA
IL_7NRD_0201/LA/517:525,
1/LA/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_7NRD_0211/LA/531:538,
1/LA/553:561
No text annotation
homologous
IL_5TBW_020
NA
IL_7NRD_0221/LA/668:670,
1/LA/792:794
Isolated non-canonical cWW pair
homologous
IL_5TBW_021
NA
IL_7NRD_0231/LA/680:684,
1/LA/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_7NRD_0241/LA/725:728,
1/LA/741:745
No text annotation
homologous
IL_8C3A_025
NA
IL_7NRD_0251/LA/752:753,
1/LA/779:781
Single bulged A
homologous
IL_8C3A_026
NA
IL_7NRD_0261/LA/755:756,
1/LA/775:777
Single bulged U
homologous
IL_5TBW_025
NA
IL_7NRD_0271/LA/758:763,
1/LA/768:773
No text annotation
homologous
IL_8C3A_028
NA
IL_7NRD_0281/LA/803:805,
1/LA/938:940
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7NRD_0291/LA/805:809,
1/LA/931:938
tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_7NRD_0301/LA/833:838,
1/LA/855:861
No text annotation
geometric
IL_4V88_462
NA
IL_7NRD_2351/LA/869:872,
1/LA/888:890
No text annotation
homologous
IL_8P9A_259
IL_51387.3
IL_7NRD_0321/LA/873:875,
1/LA/886:887
Single bulged U
homologous
IL_8C3A_035
NA
IL_7NRD_0331/LA/907:909,
1/LA/919:923
Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7NRD_0341/LA/954:956,
1/LA/965:967
Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7NRD_0351/LA/969:970,
1/LA/1111:1113
No text annotation
homologous
IL_8C3A_038
NA
IL_7NRD_0361/LA/977:982,
1/LA/1101:1104
No text annotation
IL_7NRD_0371/LA/983:985,
1/LA/1099:1100
Single bulged G
homologous
IL_8C3A_040
NA
IL_7NRD_0381/LA/991:997,
1/LA/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_7NRD_0391/LA/997:998,
1/LA/1050:1052
Minor groove platform
homologous
IL_8C3A_042
NA
IL_7NRD_0401/LA/999:1004,
1/LA/1046:1049
C-loop
homologous
IL_5TBW_040
NA
IL_7NRD_0411/LA/1006:1009,
1/LA/1041:1044
Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7NRD_0421/LA/1009:1011,
1/LA/1039:1041
Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_7NRD_0431/LA/1014:1018,
1/LA/1034:1036
Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_7NRD_0441/LA/1069:1071,
1/LA/1087:1089
Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_7NRD_0451/LA/1074:1076,
1/LA/1083:1084
Single bulged G
homologous
IL_8C3A_048
NA
IL_7NRD_0461/LA/1120:1122,
1/LA/1136:1138
Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7NRD_0471/LA/1167:1171,
1/LA/1328:1332
UAA/GAN
homologous
IL_8C3A_051
NA
IL_7NRD_0481/LA/1173:1180,
1/LA/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_7NRD_0491/LA/1180:1182,
1/LA/1324:1325
Single bulged U
geometric
IL_7A0S_035
IL_89505.4
IL_7NRD_0501/LA/1187:1194,
1/LA/1314:1319
No text annotation
geometric
IL_5TBW_051
NA
IL_7NRD_0511/LA/1194:1205,
1/LA/1299:1314
No text annotation
geometric
IL_5TBW_052
NA
IL_7NRD_0521/LA/1207:1209,
1/LA/1296:1297
Single bulged U
homologous
IL_8C3A_056
NA
IL_7NRD_0531/LA/1218:1226,
1/LA/1283:1287
Kink-turn
homologous
IL_8C3A_057
NA
IL_7NRD_0541/LA/1234:1239,
1/LA/1249:1254
No text annotation
IL_7NRD_0551/LA/1262:1266,
1/LA/1275:1277
Major groove platform with extra cWW
geometric
IL_1MMS_002
IL_51387.3
IL_7NRD_0561/LA/1376:1378,
1/LA/1428:1431
No text annotation
homologous
IL_8C3A_061
NA
IL_7NRD_0571/LA/1385:1387,
1/LA/1420:1421
Single bulged A
homologous
IL_8C3A_062
NA
IL_7NRD_0581/LA/1388:1395,
1/LA/1415:1419
Kink-turn
homologous
IL_8C3A_063
NA
IL_7NRD_0591/LA/1398:1400,
1/LA/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_7NRD_0601/LA/1444:1450,
1/LA/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_7NRD_2371/LA/1501:1505,
1/LA/1513:1515
C-loop
homologous
IL_8C3A_482
NA
IL_7NRD_0621/LA/1532:1536,
1/LA/1585:1590
UAA/GAN
homologous
IL_8C3A_067
NA
IL_7NRD_0631/LA/1561:1562,
1/LA/1577:1579
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7NRD_0641/LA/1618:1621,
1/LA/1824:1826
No text annotation
homologous
IL_8C3A_070
NA
IL_7NRD_0651/LA/1623:1624,
1/LA/1819:1822
Multiple bulged bases
geometric
IL_4V9F_021
IL_82107.5
IL_7NRD_0661/LA/1627:1631,
1/LA/1811:1816
No text annotation
homologous
IL_8C3A_072
NA
IL_7NRD_0671/LA/1645:1649,
1/LA/1806:1810
Triple sheared
geometric
IL_5TBW_067
NA
IL_7NRD_0681/LA/1661:1663,
1/LA/1786:1788
Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_7NRD_0691/LA/1669:1670,
1/LA/1778:1780
Single bulged C
geometric
IL_5TBW_069
NA
IL_7NRD_0701/LA/1670:1671,
1/LA/1776:1778
Single stack bend
homologous
IL_8C3A_076
NA
IL_7NRD_0711/LA/1694:1698,
1/LA/1747:1752
No text annotation
homologous
IL_8C3A_077
NA
IL_7NRD_0721/LA/1702:1707,
1/LA/1737:1743
No text annotation
homologous
IL_5TBW_072
NA
IL_7NRD_0731/LA/1711:1717,
1/LA/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA
IL_7NRD_0741/LA/1883:1889,
1/LA/2346:2349
No text annotation
homologous
IL_5TBW_074
NA
IL_7NRD_0751/LA/1895:1897,
1/LA/2338:2340
No text annotation
homologous
IL_8C3A_081
NA
IL_7NRD_0761/LA/1898:1901,
1/LA/2336:2337
Major groove platform; stack outside cWW
geometric
IL_4V9F_008
IL_50694.7
IL_7NRD_2381/LA/1898:1906,
1/LA/2333:2337
No text annotation
homologous
IL_8C3A_484
NA
IL_7NRD_0771/LA/1901:1906,
1/LA/2333:2336
No text annotation
homologous
IL_8C3A_083
NA
IL_7NRD_0781/LA/1918:1923,
1/LA/1928:1934
No text annotation
homologous
IL_8C3A_084
NA
IL_7NRD_0791/LA/1940:1942,
1/LA/2106:2108
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7NRD_0801/LA/1947:1948,
1/LA/2098:2101
No text annotation
homologous
IL_5TBW_080
NA
IL_7NRD_0811/LA/1951:1953,
1/LA/2094:2095
Single stack bend
geometric
IL_7RQB_005
NA
IL_7NRD_0821/LA/2128:2129,
1/LA/2323:2325
Single bulged A
homologous
IL_5TBW_082
NA
IL_7NRD_0831/LA/2156:2161,
1/LA/2173:2180
Kink-turn related
homologous
IL_5TBW_083
NA
IL_7NRD_0841/LA/2196:2199,
1/LA/2245:2246
No text annotation
homologous
IL_8C3A_089
NA
IL_7NRD_0851/LA/2200:2201,
1/LA/2241:2244
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7NRD_0861/LA/2204:2206,
1/LA/2237:2238
Single stack bend
homologous
IL_8C3A_091
NA
IL_7NRD_2401/LA/2204:2210,
1/LA/2235:2238
No text annotation
IL_7NRD_0871/LA/2206:2210,
1/LA/2235:2237
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_7NRD_0881/LA/2211:2217,
1/LA/2228:2234
No text annotation
homologous
IL_8C3A_093
NA
IL_7NRD_0891/LA/2276:2277,
1/LA/2307:2310
Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_7NRD_0901/LA/2277:2288,
1/LA/2304:2307
No text annotation
homologous
IL_8C3A_095
NA
IL_7NRD_0911/LA/2391:2394,
1/LA/2986:2988
Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_7NRD_0921/LA/2396:2398,
1/LA/2981:2984
Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_7NRD_0931/LA/2409:2411,
1/LA/2811:2812
Single bulged U
homologous
IL_8C3A_098
NA
IL_7NRD_0941/LA/2412:2413,
1/LA/2807:2810
Minor groove platform
homologous
IL_8C3A_099
NA
IL_7NRD_0951/LA/2423:2425,
1/LA/2604:2607
Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_7NRD_0961/LA/2444:2446,
1/LA/2500:2503
No text annotation
IL_7NRD_0971/LA/2520:2526,
1/LA/2584:2587
No text annotation
homologous
IL_8C3A_106
NA
IL_7NRD_0981/LA/2614:2615,
1/LA/2625:2627
Single bulged A
homologous
IL_8C3A_107
NA
IL_7NRD_0991/LA/2666:2668,
1/LA/2686:2690
Isolated tHS basepair with bulges
geometric
IL_4V9F_080
IL_61476.2
IL_7NRD_1001/LA/2718:2721,
1/LA/2735:2738
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_7NRD_1011/LA/2770:2773,
1/LA/2787:2788
Single stack bend
homologous
IL_8C3A_110
NA
IL_7NRD_1021/LA/2823:2824,
1/LA/2865:2867
Major groove platform
geometric
IL_5TBW_102
NA
IL_7NRD_1031/LA/2824:2828,
1/LA/2862:2865
No text annotation
homologous
IL_8C3A_111
NA
IL_7NRD_1041/LA/2828:2830,
1/LA/2858:2862
Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_51387.3
IL_7NRD_1051/LA/2835:2839,
1/LA/2849:2853
Triple sheared
homologous
IL_5TBW_106
NA
IL_7NRD_1061/LA/2876:2877,
1/LA/2949:2951
Major groove platform
homologous
IL_5TBW_107
NA
IL_7NRD_1071/LA/2879:2881,
1/LA/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_7NRD_1081/LA/2881:2882,
1/LA/2940:2943
No text annotation
homologous
IL_8C3A_117
NA
IL_7NRD_1091/LA/2889:2891,
1/LA/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_7NRD_2421/LA/2889:2892,
1/LA/2909:2914
No text annotation
homologous
IL_8C3A_486
NA
IL_7NRD_1101/LA/2891:2892,
1/LA/2909:2912
Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_7NRD_1111/LA/2918:2920,
1/LA/2926:2928
Isolated non-canonical cWW pair
geometric
IL_5Y7M_007
IL_87907.2
IL_7NRD_1121/LA/2960:2961,
1/LA/2970:2972
Single bulged A
geometric
IL_7RQB_101
NA
IL_7NRD_1131/LA/3004:3007,
1/LA/3139:3144
Double sheared
homologous
IL_8C3A_123
NA
IL_7NRD_1141/LA/3012:3014,
1/LA/3040:3042
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7NRD_1151/LA/3018:3025,
1/LA/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7NRD_1161/LA/3047:3051,
1/LA/3091:3094
Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_7NRD_1171/LA/3054:3059,
1/LA/3084:3088
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7NRD_1181/LA/3063:3064,
1/LA/3077:3080
No text annotation
homologous
IL_8C3A_128
NA
IL_7NRD_1191/LA/3103:3107,
1/LA/3127:3131
UAA/GAN
homologous
IL_8C3A_129
NA
IL_7NRD_1201/LA/3158:3159,
1/LA/3291:3293
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7NRD_1211/LA/3164:3166,
1/LA/3284:3286
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_7NRD_1221/LA/3168:3170,
1/LA/3280:3282
Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_7NRD_1231/LA/3177:3179,
1/LA/3210:3211
Single bulged A
homologous
IL_5TBW_123
NA
IL_7NRD_1241/LA/3179:3188,
1/LA/3204:3210
No text annotation
geometric
IL_5TBW_124
NA
IL_7NRD_1251/LA/3193:3194,
1/LA/3197:3199
Single bulged U
geometric
IL_5TBW_125
NA
IL_7NRD_1261/LA/3225:3229,
1/LA/3258:3260
No text annotation
homologous
IL_8C3A_133
NA
IL_7NRD_1271/LA/3233:3235,
1/LA/3252:3254
Isolated non-canonical cWW pair
geometric
IL_4M4O_002
IL_87907.2
IL_7NRD_1281/LA/3235:3238,
1/LA/3249:3252
Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_7NRD_1291/LA/3300:3303,
1/LA/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7NRD_1301/LA/3318:3320,
1/LA/3387:3388
Single bulged U
homologous
IL_5TBW_130
NA
IL_7NRD_1311/LA/3324:3325,
1/LA/3381:3383
Single bulged U
homologous
IL_5TBW_131
NA
IL_7NRD_1321/LA/3328:3330,
1/LA/3373:3378
No text annotation
homologous
IL_8C3A_138
NA
IL_7NRD_1331/LA/3332:3337,
1/LA/3367:3371
No text annotation
homologous
IL_8C3A_139
NA
IL_7NRD_1341/LA/3340:3342,
1/LA/3363:3364
Single bulged U
homologous
IL_8C3A_140
NA
IL_7NRD_1351/LA/3342:3345,
1/LA/3360:3363
Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_7NRD_1361/LA/3349:3350,
1/LA/3353:3356
Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_7NRD_1371/LB/15:16,
1/LB/63:65
Single bulged A
homologous
IL_5TBW_372
NA
IL_7NRD_1381/LB/21:27,
1/LB/53:58
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7NRD_1391/LB/28:29,
1/LB/49:52
Minor groove platform
homologous
IL_5TBW_374
NA
IL_7NRD_1401/LB/29:30,
1/LB/47:49
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7NRD_1411/LB/32:36,
1/LB/41:45
Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_7NRD_1421/LB/72:80,
1/LB/100:106
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_7NRD_1431/LB/84:87,
1/LB/94:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7NRD_1441/LC/64:66,
1/LC/93:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_7NRD_1451/LC/68:69,
1/LC/89:91
Single bulged U
homologous
IL_5TBW_146
NA
IL_7NRD_1461/S2/24:26,
1/S2/600:601
Single bulged C
homologous
IL_4V88_384
NA
IL_7NRD_1471/S2/35:37,
1/S2/471:473
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_7NRD_1481/S2/42:48,
1/S2/431:433
No text annotation
homologous
IL_4V88_387
NA
IL_7NRD_1491/S2/50:52,
1/S2/428:429
Minor groove platform
homologous
IL_4V88_388
NA
IL_7NRD_1501/S2/58:63,
1/S2/87:89
No text annotation
homologous
IL_4V88_389
NA
IL_7NRD_1511/S2/64:69,
1/S2/82:86
No text annotation
homologous
IL_4V88_390
NA
IL_7NRD_1521/S2/109:112,
1/S2/302:305
Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_7NRD_1531/S2/113:116,
1/S2/300:301
Multiple bulged bases
homologous
IL_4V88_392
NA
IL_7NRD_1541/S2/117:122,
1/S2/295:299
No text annotation
homologous
IL_4V88_393
NA
IL_7NRD_1551/S2/143:149,
1/S2/165:172
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_7NRD_1561/S2/150:152,
1/S2/162:164
Isolated cWH basepair
geometric
IL_6RA4_002
IL_10167.6
IL_7NRD_1571/S2/186:189,
1/S2/196:199
Double sheared
homologous
IL_4V88_396
NA
IL_7NRD_1581/S2/204:206,
1/S2/259:263
Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_7NRD_1591/S2/206:208,
1/S2/257:259
Isolated non-canonical cWW pair
geometric
IL_3TD0_001
IL_28037.2
IL_7NRD_1601/S2/270:273,
1/S2/283:285
No text annotation
homologous
IL_4V88_400
NA
IL_7NRD_1611/S2/275:276,
1/S2/279:281
Single bulged U
homologous
IL_4V88_401
NA
IL_7NRD_1621/S2/311:316,
1/S2/348:355
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_7NRD_1631/S2/318:323,
1/S2/345:346
No text annotation
homologous
IL_4V88_403
NA
IL_7NRD_1641/S2/363:365,
1/S2/376:381
No text annotation
homologous
IL_4V88_404
NA
IL_7NRD_1651/S2/389:391,
1/S2/406:408
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_7NRD_1661/S2/411:414,
1/S2/419:422
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_85033.2
IL_7NRD_1671/S2/439:441,
1/S2/463:464
Single bulged U
homologous
IL_4V88_407
NA
IL_7NRD_1681/S2/443:447,
1/S2/460:461
C-loop
geometric
IL_4LFB_015
IL_03109.3
IL_7NRD_2441/S2/443:448,
1/S2/458:461
No text annotation
IL_7NRD_1691/S2/447:448,
1/S2/458:460
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_7NRD_2531/S2/481:483,
1/S2/504:507
No text annotation
IL_7NRD_1711/S2/517:518,
1/S2/533:535
Minor groove platform
geometric
IL_4LFB_004
IL_51454.3
IL_7NRD_1721/S2/518:520,
1/S2/532:533
Minor groove platform
homologous
IL_4V88_412
NA
IL_7NRD_1731/S2/550:557,
1/S2/587:588
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7NRD_1741/S2/557:559,
1/S2/586:587
Single bulged U
homologous
IL_4V88_414
NA
IL_7NRD_1751/S2/562:568,
1/S2/575:583
Kink-turn related
homologous
IL_4V88_415
NA
IL_7NRD_1761/S2/616:622,
1/S2/1104:1105
No text annotation
homologous
IL_4V88_416
NA
IL_7NRD_1771/S2/624:626,
1/S2/973:975
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7NRD_1781/S2/627:631,
1/S2/968:972
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7NRD_1791/S2/646:648,
1/S2/686:688
Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_87907.2
IL_7NRD_1801/S2/648:650,
1/S2/685:686
Single stack bend
geometric
IL_4V9F_005
IL_90729.1
IL_7NRD_1811/S2/650:651,
1/S2/683:685
Single stack bend
geometric
IL_7RQB_091
NA
IL_7NRD_1821/S2/651:658,
1/S2/676:683
No text annotation
IL_7NRD_2451/S2/703:716,
1/S2/722:735
No text annotation
IL_7NRD_1831/S2/746:747,
1/S2/802:805
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_7NRD_1841/S2/748:750,
1/S2/799:801
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_7NRD_1851/S2/751:759,
1/S2/791:798
No text annotation
homologous
IL_4V88_425
NA
IL_7NRD_1861/S2/816:822,
1/S2/850:857
No text annotation
IL_7NRD_1871/S2/865:866,
1/S2/962:965
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_7NRD_2481/S2/868:869,
1/S2/958:960
Single bulged U
geometric
IL_3NDB_005
IL_89505.4
IL_7NRD_2491/S2/871:873,
1/S2/954:956
Isolated non-canonical cWW pair
geometric
IL_8D29_001
IL_87907.2
IL_7NRD_1901/S2/874:878,
1/S2/950:953
Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7NRD_1911/S2/885:888,
1/S2/924:927
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7NRD_1921/S2/893:899,
1/S2/910:919
Kink-turn related
homologous
IL_8C3A_440
NA
IL_7NRD_1931/S2/985:990,
1/S2/1014:1016
Other IL
geometric
IL_4V88_435
NA
IL_7NRD_1941/S2/990:994,
1/S2/1010:1014
tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_7NRD_1951/S2/1034:1036,
1/S2/1095:1101
No text annotation
homologous
IL_4V88_437
NA
IL_7NRD_1961/S2/1041:1044,
1/S2/1074:1077
Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_7NRD_1971/S2/1051:1053,
1/S2/1066:1067
Single bulged U
geometric
IL_3WBM_001
IL_89505.4
IL_7NRD_1981/S2/1111:1118,
1/S2/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_7NRD_1991/S2/1146:1147,
1/S2/1630:1632
Single bulged A
homologous
IL_4V88_441
NA
IL_7NRD_2001/S2/1149:1151,
1/S2/1627:1628
Single bulged G
homologous
IL_4V88_442
NA
IL_7NRD_2011/S2/1157:1160,
1/S2/1617:1621
C-loop
homologous
IL_4V88_443
NA
IL_7NRD_2021/S2/1173:1175,
1/S2/1464:1466
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_7NRD_2031/S2/1178:1179,
1/S2/1459:1461
Minor groove platform
homologous
IL_4V88_445
NA
IL_7NRD_2041/S2/1213:1215,
1/S2/1448:1450
Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_7NRD_2051/S2/1224:1233,
1/S2/1252:1259
No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_7NRD_2061/S2/1234:1236,
1/S2/1249:1251
No text annotation
homologous
IL_4V88_448
NA
IL_7NRD_2071/S2/1268:1270,
1/S2/1440:1441
Single bulged U
homologous
IL_4V88_449
NA
IL_7NRD_2511/S2/1272:1275,
1/S2/1437:1438
Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.5
IL_7NRD_2091/S2/1276:1278,
1/S2/1430:1436
Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_7NRD_2101/S2/1280:1281,
1/S2/1426:1428
Single bulged A
homologous
IL_4V88_452
NA
IL_7NRD_2111/S2/1290:1292,
1/S2/1323:1325
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_7NRD_2121/S2/1306:1308,
1/S2/1317:1318
Minor groove platform
homologous
IL_4V88_454
NA
IL_7NRD_2521/S2/1335:1337,
1/S2/1415:1416
Single stack bend
geometric
IL_7KGA_003
IL_90729.1
IL_7NRD_2131/S2/1339:1342,
1/S2/1383:1385
Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_7NRD_2141/S2/1345:1348,
1/S2/1377:1380
Minor groove platform
homologous
IL_4V88_456
NA
IL_7NRD_2151/S2/1352:1354,
1/S2/1369:1373
Isolated non-canonical cWW pair
homologous
IL_4V88_457
NA
IL_7NRD_2161/S2/1389:1391,
1/S2/1407:1412
Major groove platform; stack outside cWW
homologous
IL_4V88_458
NA
IL_7NRD_2171/S2/1480:1487,
1/S2/1519:1527
No text annotation
homologous
IL_4V88_459
NA
IL_7NRD_2181/S2/1488:1494,
1/S2/1513:1518
180 degree turn
homologous
IL_4V88_460
NA
IL_7NRD_2191/S2/1495:1498,
1/S2/1509:1512
Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_7NRD_2201/S2/1540:1545,
1/S2/1566:1571
No text annotation
homologous
IL_4V88_462
NA
IL_7NRD_2211/S2/1636:1638,
1/S2/1764:1767
No text annotation
homologous
IL_4V88_463
NA
IL_7NRD_2221/S2/1638:1641,
1/S2/1760:1764
No text annotation
homologous
IL_8C3A_471
NA
IL_7NRD_2231/S2/1642:1644,
1/S2/1757:1759
Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_7NRD_2241/S2/1644:1647,
1/S2/1753:1757
No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_7NRD_2251/S2/1650:1652,
1/S2/1748:1750
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7NRD_2261/S2/1653:1656,
1/S2/1744:1747
Double sheared
geometric
IL_4V88_468
NA
IL_7NRD_2271/S2/1656:1658,
1/S2/1743:1744
Single bulged U
homologous
IL_4V88_469
NA
IL_7NRD_2281/S2/1665:1667,
1/S2/1734:1736
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_7NRD_2291/S2/1669:1672,
1/S2/1729:1732
Double sheared
geometric
IL_4V88_471
NA
IL_7NRD_2301/S2/1672:1674,
1/S2/1727:1729
Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_7NRD_2311/S2/1675:1678,
1/S2/1723:1726
Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_7NRD_2321/S2/1678:1682,
1/S2/1719:1723
Triple sheared
geometric
IL_4V88_474
NA
IL_7NRD_2331/S2/1688:1690,
1/S2/1711:1713
No text annotation
geometric
IL_3ICQ_003
NA
IL_7NRD_2341/S2/1693:1695,
1/S2/1706:1708
Isolated non-canonical cWW pair
geometric
IL_4E48_005
IL_87907.2

Problematic loops

#loop idProblemSequence
IL_7NRD_001No text annotation
IL_7NRD_018No text annotation
IL_7NRD_031No text annotation
IL_7NRD_236No text annotation
IL_7NRD_061No text annotation
IL_7NRD_239Isolated non-canonical cWW with bulges
IL_7NRD_241No text annotation
IL_7NRD_243No text annotation
IL_7NRD_170No text annotation
IL_7NRD_246Tandem non-canonical cWW pairs
IL_7NRD_247Isolated cWH basepair
IL_7NRD_188No text annotation
IL_7NRD_189Tandem non-canonical cWW pairs
IL_7NRD_250No text annotation
IL_7NRD_208Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7NRD_0011/LA/113:123,
1/LA/149:158,
1/LA/263:267
No text annotation
homologous
J3_8C3A_001
NA
J3_7NRD_0311/LA/113:124,
1/LA/144:158,
1/LA/263:267
No text annotation
J3_7NRD_0321/LA/185:189,
1/LA/205:214,
1/LA/226:231
No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_7NRD_0331/LA/340:356,
1/LA/363:368,
1/LC/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_7NRD_0021/LA/369:376,
1/LA/403:404,
1/LC/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_7NRD_0341/LA/369:379,
1/LA/390:404,
1/LC/19:20
No text annotation
homologous
J3_8C3A_049
NA
J3_7NRD_0031/LA/502:503,
1/LA/588:597,
1/LA/606:611
No text annotation
homologous
J3_5TBW_003
NA
J3_7NRD_0041/LA/814:820,
1/LA/905:907,
1/LA/923:926
No text annotation
homologous
J3_8C3A_003
NA
J3_7NRD_0051/LA/828:831,
1/LA/863:867,
1/LA/892:897
No text annotation
homologous
J3_5TBW_005
NA
J3_7NRD_0061/LA/986:987,
1/LA/1062:1066,
1/LA/1092:1098
No text annotation
homologous
J3_5TBW_006
NA
J3_7NRD_0071/LA/1230:1232,
1/LA/1256:1262,
1/LA/1277:1279
No text annotation
homologous
J3_8C3A_005
NA
J3_7NRD_0081/LA/1479:1485,
1/LA/1857:1859,
1/LA/1871:1874
No text annotation
homologous
J3_8C3A_006
NA
J3_7NRD_0091/LA/1488:1491,
1/LA/1837:1843,
1/LA/1852:1854
No text annotation
homologous
J3_8C3A_007
NA
J3_7NRD_0101/LA/1526:1531,
1/LA/1591:1595,
1/LA/1612:1613
No text annotation
homologous
J3_5TBW_010
NA
J3_7NRD_0351/LA/1537:1542,
1/LA/1551:1561,
1/LA/1579:1584
No text annotation
J3_7NRD_0111/LA/1631:1632,
1/LA/1641:1645,
1/LA/1810:1811
No text annotation
homologous
J3_8C3A_054
NA
J3_7NRD_0361/LA/1654:1658,
1/LA/1791:1792,
1/LA/1796:1801
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7NRD_0121/LA/2432:2435,
1/LA/2512:2517,
1/LA/2590:2597
No text annotation
homologous
J3_8C3A_008
NA
J3_7NRD_0131/LA/2529:2532,
1/LA/2547:2563,
1/LA/2578:2581
No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_7NRD_0371/LA/2651:2653,
1/LA/2754:2765,
1/LA/2793:2798
No text annotation
homologous
J3_8C3A_056
NA
J3_7NRD_0141/LA/2664:2666,
1/LA/2690:2692,
1/LA/2701:2706
No text annotation
homologous
J3_5TBW_013
NA
J3_7NRD_0151/LA/2886:2889,
1/LA/2914:2916,
1/LA/2930:2936
No text annotation
homologous
J3_8C3A_011
NA
J3_7NRD_0381/LA/3171:3176,
1/LA/3212:3220,
1/LA/3265:3279
No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_7NRD_0161/LA/3298:3300,
1/LA/3314:3318,
1/LA/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_7NRD_0171/LB/9:14,
1/LB/66:67,
1/LB/111:112
No text annotation
homologous
J3_5TBW_045
NA
J3_7NRD_0181/LC/44:45,
1/LC/58:64,
1/LC/96:100
No text annotation
homologous
J3_8C3A_060
NA
J3_7NRD_0391/S2/37:42,
1/S2/433:439,
1/S2/464:471
No text annotation
J3_7NRD_0401/S2/37:48,
1/S2/431:439,
1/S2/464:471
No text annotation
J3_7NRD_0411/S2/213:228,
1/S2/237:243,
1/S2/250:252
No text annotation
J3_7NRD_0191/S2/633:635,
1/S2/861:865,
1/S2/965:966
No text annotation
geometric
J3_4V88_080
NA
J3_7NRD_0421/S2/633:635,
1/S2/861:866,
1/S2/962:966
No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_7NRD_0201/S2/760:763,
1/S2/773:775,
1/S2/785:790
No text annotation
homologous
J3_4V88_032
NA
J3_7NRD_0211/S2/881:884,
1/S2/928:936,
1/S2/943:947
No text annotation
homologous
J3_4V88_033
NA
J3_7NRD_0221/S2/1037:1039,
1/S2/1079:1083,
1/S2/1090:1094
No text annotation
homologous
J3_4V88_034
NA
J3_7NRD_0231/S2/1161:1164,
1/S2/1581:1587,
1/S2/1609:1616
No text annotation
homologous
J3_4V88_035
NA
J3_7NRD_0241/S2/1168:1171,
1/S2/1468:1470,
1/S2/1574:1577
No text annotation
homologous
J3_8C3A_039
NA
J3_7NRD_0251/S2/1180:1187,
1/S2/1198:1209,
1/S2/1454:1458
No text annotation
homologous
J3_8C3A_040
NA
J3_7NRD_0261/S2/1215:1220,
1/S2/1263:1267,
1/S2/1442:1448
No text annotation
homologous
J3_8C3A_041
NA
J3_7NRD_0271/S2/1283:1288,
1/S2/1327:1332,
1/S2/1419:1424
No text annotation
homologous
J3_4V88_039
NA
J3_7NRD_0281/S2/1293:1294,
1/S2/1303:1306,
1/S2/1318:1322
No text annotation
homologous
J3_8C3A_085
NA
J3_7NRD_0431/S2/1337:1338,
1/S2/1386:1389,
1/S2/1412:1415
No text annotation
J3_7NRD_0441/S2/1337:1338,
1/S2/1386:1391,
1/S2/1407:1415
No text annotation
J3_7NRD_0301/S2/1470:1474,
1/S2/1533:1540,
1/S2/1571:1574
No text annotation
homologous
J3_4V88_041
NA
J4_7NRD_0011/LA/112:113,
1/LA/267:272,
1/LA/293:299,
1/LA/316:319
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_7NRD_0021/LA/185:189,
1/LA/205:208,
1/LA/212:214,
1/LA/226:231
No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7NRD_0031/LA/1451:1457,
1/LA/1475:1476,
1/LA/1877:1880,
1/LA/2352:2353
No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_7NRD_0041/LA/1492:1496,
1/LA/1520:1525,
1/LA/1614:1615,
1/LA/1829:1836
No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_7NRD_0051/LA/1674:1675,
1/LA/1693:1694,
1/LA/1752:1753,
1/LA/1772:1773
No text annotation
homologous
J4_8C3A_005
NA
J4_7NRD_0061/LA/2130:2134,
1/LA/2146:2150,
1/LA/2186:2190,
1/LA/2317:2322
No text annotation
homologous
J4_8C3A_006
NA
J4_7NRD_0071/LA/2192:2194,
1/LA/2248:2249,
1/LA/2267:2276,
1/LA/2310:2315
No text annotation
homologous
J4_8C3A_007
NA
J4_7NRD_0081/LA/2654:2658,
1/LA/2712:2716,
1/LA/2740:2742,
1/LA/2751:2753
No text annotation
homologous
J4_8C3A_008
NA
J4_7NRD_0091/LA/3010:3012,
1/LA/3042:3043,
1/LA/3098:3100,
1/LA/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_7NRD_0101/S2/99:107,
1/S2/307:309,
1/S2/357:361,
1/S2/383:384
No text annotation
homologous
J4_8C3A_021
NA
J4_7NRD_0111/S2/622:624,
1/S2/975:980,
1/S2/1021:1032,
1/S2/1103:1104
No text annotation
homologous
J4_8C3A_022
NA
J4_7NRD_0121/Sm/7:10,
1/Sm/26:28,
1/Sm/44:50,
1/Sm/66:67
tRNA junction
homologous
J4_6JXM_001
J4_70449.29
J4_7NRD_0131/Sn/7:11,
1/Sn/24:27,
1/Sn/43:49,
1/Sn/65:66
No text annotation
J5_7NRD_0011/LA/20:22,
1/LC/35:42,
1/LC/102:107,
1/LC/115:116,
1/LC/137:139
No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7NRD_0021/LA/658:663,
1/LA/799:802,
1/LA/941:944,
1/LA/1375:1376,
1/LA/1431:1437
No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_7NRD_0031/LA/675:678,
1/LA/702:706,
1/LA/713:721,
1/LA/749:751,
1/LA/782:787
No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_7NRD_0041/LA/1906:1914,
1/LA/1938:1939,
1/LA/2109:2110,
1/LA/2114:2122,
1/LA/2331:2333
No text annotation
homologous
J5_8C3A_004
NA
J5_7NRD_0051/LA/2399:2406,
1/LA/2815:2823,
1/LA/2867:2876,
1/LA/2951:2957,
1/LA/2975:2980
No text annotation
J5_7NRD_0061/LA/2416:2419,
1/LA/2611:2614,
1/LA/2627:2628,
1/LA/2650:2651,
1/LA/2798:2804
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_7NRD_0071/S2/31:35,
1/S2/473:479,
1/S2/509:516,
1/S2/536:546,
1/S2/592:595
No text annotation
J5_7NRD_0081/S2/54:57,
1/S2/90:97,
1/S2/386:388,
1/S2/409:411,
1/S2/422:426
No text annotation
homologous
J5_8C3A_020
NA
J5_7NRD_0091/S2/124:143,
1/S2/172:182,
1/S2/203:204,
1/S2/263:267,
1/S2/288:293
No text annotation
J5_7NRD_0111/S2/636:642,
1/S2/692:698,
1/S2/740:744,
1/S2/807:816,
1/S2/857:860
No text annotation
J6_7NRD_0011/LA/22:27,
1/LA/58:68,
1/LA/75:79,
1/LA/106:110,
1/LA/321:331,
1/LC/32:35
No text annotation
J6_7NRD_0021/LA/2416:2419,
1/LA/2611:2614,
1/LA/2627:2628,
1/LA/2650:2653,
1/LA/2754:2765,
1/LA/2793:2804
No text annotation
J7_7NRD_0011/LA/949:954,
1/LA/967:968,
1/LA/1114:1117,
1/LA/1141:1146,
1/LA/1157:1161,
1/LA/1338:1339,
1/LA/1365:1370
No text annotation

Problematic loops

#loop idProblemSequence
J3_7NRD_029No text annotation
J5_7NRD_010No text annotation

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