HL_7NRD_010

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1462

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRD|1|LA|A|357
7NRD|1|LA|G|358
7NRD|1|LA|U|359
7NRD|1|LA|G|360
7NRD|1|LA|A|361
7NRD|1|LA|U|362

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain Ll

60S ribosomal protein L37-A

Chain Ln

60S ribosomal protein L39