HL_7NRD_025

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7NRD|1|LA|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_025 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.2124

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRD|1|LA|G|1126
7NRD|1|LA|G|1127
7NRD|1|LA|U|1128
7NRD|1|LA|A|1129
7NRD|1|LA|A|1130
7NRD|1|LA|G|1131
7NRD|1|LA|C|1132

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L29