HL_7NRD_027

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7NRD|1|LA|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_027 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3696

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7NRD|1|LA|C|1239
7NRD|1|LA|A|1240
7NRD|1|LA|U|1241
7NRD|1|LA|G|1242
7NRD|1|LA|G|1243
7NRD|1|LA|A|1244
7NRD|1|LA|A|1245
7NRD|1|LA|G|1246
7NRD|1|LA|U|1247
7NRD|1|LA|C|1248
7NRD|1|LA|G|1249

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains