HL_7NRD_035

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

7NRD|1|LA|U|1606, 7NRD|1|LA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1544

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|G|1599
7NRD|1|LA|U|1600
7NRD|1|LA|U|1601
7NRD|1|LA|A|1602
7NRD|1|LA|A|1603
7NRD|1|LA|G|1604
7NRD|1|LA|A|1605
7NRD|1|LA|U|1606
7NRD|1|LA|U|1607
7NRD|1|LA|C|1608

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LZ

60S ribosomal protein L25

Chain Li

60S ribosomal protein L34-A