HL_7NRD_037

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

7NRD|1|LA|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1641

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NRD|1|LA|G|1680
7NRD|1|LA|U|1681
7NRD|1|LA|U|1682
7NRD|1|LA|A|1683
7NRD|1|LA|U|1684
7NRD|1|LA|C|1685
7NRD|1|LA|U|1686
7NRD|1|LA|U|1687
7NRD|1|LA|U|1688

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LW

60S ribosomal protein L22-A