HL_7NRD_048

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_048 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.1946

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRD|1|LA|A|2220
7NRD|1|LA|G|2221
7NRD|1|LA|A|2222
7NRD|1|LA|A|2223
7NRD|1|LA|A|2224
7NRD|1|LA|U|2225

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lk

60S ribosomal protein L36-A

Chain Lq

60S ribosomal protein L42-A