HL_7NRD_053

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

7NRD|1|LA|C|2539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|LA|A|2535
7NRD|1|LA|A|2536
7NRD|1|LA|U|2537
7NRD|1|LA|U|2538
7NRD|1|LA|C|2539
7NRD|1|LA|A|2540
7NRD|1|LA|U|2541
7NRD|1|LA|U|2542
7NRD|1|LA|U|2543
7NRD|1|LA|U|2544

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LJ

60S ribosomal protein L8-A

Chain SQ

40S ribosomal protein S1-A