HL_7NRD_055

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7NRD|1|LA|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_055 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1728

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7NRD|1|LA|C|2616
7NRD|1|LA|U|2617
7NRD|1|LA|G|2618
7NRD|1|LA|G|2619
7NRD|1|LA|G|2620
7NRD|1|LA|G|2621
7NRD|1|LA|C|2622
7NRD|1|LA|G|2623
7NRD|1|LA|G|2624

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L29

Chain Sn

Transfer RNA; tRNA