HL_7NRD_057

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2862

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NRD|1|LA|A|2673
7NRD|1|LA|A|2674
7NRD|1|LA|C|2675
7NRD|1|LA|A|2676
7NRD|1|LA|G|2677
7NRD|1|LA|A|2678
7NRD|1|LA|A|2679
7NRD|1|LA|A|2680
7NRD|1|LA|U|2681

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LM

60S ribosomal protein L11-B

Chain Sn

Transfer RNA; tRNA