HL_7NRD_064

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_064 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.1562

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NRD|1|LA|U|2920
7NRD|1|LA|U|2921
7NRD|1|LA|G|2922
7NRD|1|LA|U|2923
7NRD|1|LA|U|2924
7NRD|1|LA|C|2925
7NRD|1|LA|A|2926

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3