HL_7NRD_068

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7NRD|1|LA|G|3116, 7NRD|1|LA|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1677

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|C|3110
7NRD|1|LA|U|3111
7NRD|1|LA|G|3112
7NRD|1|LA|A|3113
7NRD|1|LA|A|3114
7NRD|1|LA|C|3115
7NRD|1|LA|G|3116
7NRD|1|LA|C|3117
7NRD|1|LA|C|3118
7NRD|1|LA|U|3119
7NRD|1|LA|C|3120
7NRD|1|LA|U|3121
7NRD|1|LA|A|3122
7NRD|1|LA|A|3123
7NRD|1|LA|G|3124

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LQ

60S ribosomal protein L16-A

Chain Lo

Ubiquitin-60S ribosomal protein L40