HL_7NRD_069

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

7NRD|1|LA|U|3195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_069 not in the Motif Atlas

Homologous match to HL_5TBW_068

Geometric discrepancy: 0.2539

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7NRD|1|LA|C|3194
7NRD|1|LA|U|3195
7NRD|1|LA|U|3196
7NRD|1|LA|G|3197

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L14-A